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# Visualizing Logistic Regression ``` import numpy as np import tensorflow as tf import matplotlib.pyplot as plt from tensorflow.examples.tutorials.mnist import input_data mnist = input_data.read_data_sets('data/', one_hot=True) trainimg = mnist.train.images trainlabel = mnist.train.labels testimg = mnist.te...
github_jupyter
import numpy as np import tensorflow as tf import matplotlib.pyplot as plt from tensorflow.examples.tutorials.mnist import input_data mnist = input_data.read_data_sets('data/', one_hot=True) trainimg = mnist.train.images trainlabel = mnist.train.labels testimg = mnist.test.images testlabel = mnist.test.label...
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# Final Project Submission * Student name: `Reno Vieira Neto` * Student pace: `self paced` * Scheduled project review date/time: `Fri Oct 15, 2021 3pm – 3:45pm (PDT)` * Instructor name: `James Irving` * Blog post URL: https://renoneto.github.io/using_streamlit #### This project originated the [following app](https://...
github_jupyter
import pandas as pd import numpy as np import seaborn as sns import matplotlib.pyplot as plt import re import time from surprise import Reader, Dataset, dump from surprise.model_selection import cross_validate, GridSearchCV from surprise.prediction_algorithms import KNNBasic, KNNBaseline, SVD, SVDpp from surprise.accur...
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``` #all_slow #export from fastai.basics import * #hide from nbdev.showdoc import * #default_exp callback.tensorboard ``` # Tensorboard > Integration with [tensorboard](https://www.tensorflow.org/tensorboard) First thing first, you need to install tensorboard with ``` pip install tensorboard ``` Then launch tensorbo...
github_jupyter
#all_slow #export from fastai.basics import * #hide from nbdev.showdoc import * #default_exp callback.tensorboard pip install tensorboard in your terminal. You can change the logdir as long as it matches the `log_dir` you pass to `TensorBoardCallback` (default is `runs` in the working directory). ## Tensorboard Embe...
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<a href="https://colab.research.google.com/github/Victoooooor/SimpleJobs/blob/main/movenet.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> ``` #@title !pip install -q imageio !pip install -q opencv-python !pip install -q git+https://github.com/tenso...
github_jupyter
#@title !pip install -q imageio !pip install -q opencv-python !pip install -q git+https://github.com/tensorflow/docs #@title import tensorflow as tf import tensorflow_hub as hub from tensorflow_docs.vis import embed import numpy as np import cv2 import os # Import matplotlib libraries from matplotlib import pyplot as p...
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# Getting started with Captum Insights: a simple model on CIFAR10 dataset Demonstrates how to use Captum Insights embedded in a notebook to debug a CIFAR model and test samples. This is a slight modification of the CIFAR_TorchVision_Interpret notebook. More details about the model can be found here: https://pytorch.o...
github_jupyter
import os import torch import torch.nn as nn import torchvision import torchvision.transforms as transforms from captum.insights import AttributionVisualizer, Batch from captum.insights.features import ImageFeature def get_classes(): classes = [ "Plane", "Car", "Bird", "Cat", ...
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# Loading Image Data So far we've been working with fairly artificial datasets that you wouldn't typically be using in real projects. Instead, you'll likely be dealing with full-sized images like you'd get from smart phone cameras. In this notebook, we'll look at how to load images and use them to train neural network...
github_jupyter
%matplotlib inline %config InlineBackend.figure_format = 'retina' import matplotlib.pyplot as plt import torch from torchvision import datasets, transforms import helper dataset = datasets.ImageFolder('path/to/data', transform=transform) root/dog/xxx.png root/dog/xxy.png root/dog/xxz.png root/cat/123.png root/cat...
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``` # Visualization of the KO+ChIP Gold Standard from: # Miraldi et al. (2018) "Leveraging chromatin accessibility for transcriptional regulatory network inference in Th17 Cells" # TO START: In the menu above, choose "Cell" --> "Run All", and network + heatmap will load # Change "canvas" to "SVG" (drop-down menu in ce...
github_jupyter
# Visualization of the KO+ChIP Gold Standard from: # Miraldi et al. (2018) "Leveraging chromatin accessibility for transcriptional regulatory network inference in Th17 Cells" # TO START: In the menu above, choose "Cell" --> "Run All", and network + heatmap will load # Change "canvas" to "SVG" (drop-down menu in cell b...
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# Bagging This notebook introduces a very natural strategy to build ensembles of machine learning models named "bagging". "Bagging" stands for Bootstrap AGGregatING. It uses bootstrap resampling (random sampling with replacement) to learn several models on random variations of the training set. At predict time, the p...
github_jupyter
import pandas as pd import numpy as np # create a random number generator that will be used to set the randomness rng = np.random.RandomState(1) def generate_data(n_samples=30): """Generate synthetic dataset. Returns `data_train`, `data_test`, `target_train`.""" x_min, x_max = -3, 3 x = rng.uniform(x...
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### Dependencies for the interactive plots apart from rdkit, oechem and other qc* packages !conda install -c conda-forge plotly -y !conda install -c plotly jupyter-dash -y !conda install -c plotly plotly-orca -y ``` #imports import numpy as np from scipy import stats import fragmenter from openeye import oechem...
github_jupyter
#imports import numpy as np from scipy import stats import fragmenter from openeye import oechem TD_datasets = [ 'Fragment Stability Benchmark', # 'Fragmenter paper', # 'OpenFF DANCE 1 eMolecules t142 v1.0', 'OpenFF Fragmenter Validation 1.0', 'OpenFF Full TorsionDrive Benchmark 1', 'OpenFF Gen 2 Torsion Set ...
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# Noisy Convolutional Neural Network Example Build a noisy convolutional neural network with TensorFlow v2. - Author: Gagandeep Singh - Project: https://github.com/czgdp1807/noisy_weights Experimental Details - Datasets: The MNIST database of handwritten digits has been used for training and testing. Observations ...
github_jupyter
from __future__ import absolute_import, division, print_function import tensorflow as tf from tensorflow.keras import Model, layers import numpy as np # MNIST dataset parameters. num_classes = 10 # total classes (0-9 digits). # Training parameters. learning_rate = 0.001 training_steps = 200 batch_size = 128 display_s...
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This is a "Neural Network" toy example which implements the basic logical gates. Here we don't use any method to train the NN model. We just guess correct weight. It is meant to show how in principle NN works. ``` import math def sigmoid(x): return 1./(1+ math.exp(-x)) def neuron(inputs, weights): return sigmo...
github_jupyter
import math def sigmoid(x): return 1./(1+ math.exp(-x)) def neuron(inputs, weights): return sigmoid(sum([x*y for x,y in zip(inputs,weights)])) def almost_equal(x,y,epsilon=0.001): return abs(x-y) < epsilon def NN_OR(x1,x2): weights =[-10, 20, 20] inputs = [1, x1, x2] return neuron(weights,input...
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