Instruct: Given a paper title, retrieve paper titles that are cited by the given paper.
Query: Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
striped smith - waterman speeds database searches six times over other simd implementations .
Improving SIMD Parallelism via Dynamic Binary Translation
Implementation of Rabin Karp String Matching Algorithm Using MPI
Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints in Linear and Sublinear Time
Suffix arrays: a new method for on-line string searches
Searching and Mining Trillions of Time Series Subsequences under Dynamic Time Warping
Sequenceserver: a modern graphical user interface for custom BLAST databases
A Probabilistic Approach to Fast Pattern Matching in Time Series Databases
New text indexing functionalities of the compressed suffix arrays
The Burrows-Wheeler Transform: Theory and Practice
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
SparseDTW: A Novel Approach to Speed up Dynamic Time Warping
An O(NP) sequence comparison algorithm
A General SIMD-based Approach to Accelerating Compression Algorithms
Design and Implementation of a CUDA-Compatible GPU-based Core for Gapped BLAST Algorithm
Fast parallel similarity search in multimedia databases
A Content-Addressable DNA Database with Learned Sequence Encodings
Fidelity, Soundness, and Efficiency of Interleaved Comparison Methods
Fast gapped-read alignment with Bowtie 2
GASOLINE: a Greedy And Stochastic algorithm for Optimal Local multiple alignment of Interaction NEtworks
Modeling Strategic Partnerships Using the E3value Ontology: A Field Study in the Banking Industry
Impact of Security on Power Systems Operation
Understanding user situational relevance in ranking web search results
High-throughput sequence alignment using Graphics Processing Units
Brain MRI Findings of Nitrogen Gas Inhalation for Suicide Attempt: a Case Report