Instruct: Given the title of a paper, retrieve paper titles that are cited by the given paper.
Query: Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
High-throughput sequence alignment using Graphics Processing Units
Systematic evaluation of spliced alignment programs for RNA-seq data
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
A Customized Processing-in-Memory Architecture for Biological Sequence Alignment
A greedy algorithm for aligning DNA sequences
CrocoBLAST: Running BLAST efficiently in the age of next-generation sequencing
BAliBASE : A benchmark alignment database for the evaluation of multiple alignment programs
An efficient implementation of Smith Waterman algorithm on GPU using CUDA, for massively parallel scanning of sequence databases
Parallel architecture for DNA sequence inexact matching with Burrows-Wheeler Transform
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
BIG-ALIGN: Fast Bipartite Graph Alignment
The Sequence Alignment/Map format and SAMtools
IDBA- A Practical Iterative de Bruijn Graph De Novo Assembler
A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP
Comparative assessment of methods for aligning multiple genome sequences
High Throughput Parallel Implementation of Aho-Corasick Algorithm on a GPU
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Implementing Smith-Waterman Algorithm with Two-Dimensional Cache on GPUs
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
High-Throughput Subset Matching on Commodity GPU-Based Systems
Temporal Abstraction in Reinforcement Learning
the rectilinear steiner tree problem in np complete .
Mixed Verbs in Code-Switching: The Syntax of Light Verbs
Cellular traffic offloading through opportunistic communications: a case study
Linear pattern matching algorithms