private void updateIgnoreMarkupOptions(Options options) {

		boolean ignoreExcludedMarkup = ignoreExcludedCheckBox.isSelected();
		options.setBoolean(IGNORE_EXCLUDED_MARKUP_ITEMS, ignoreExcludedMarkup);

		boolean ignoreIncompleteMarkup = ignoreIncompleteCheckBox.isSelected();
		options.setBoolean(IGNORE_INCOMPLETE_MARKUP_ITEMS, ignoreIncompleteMarkup);
	}
The ApplyMarkupPropertyEditor provides a custom GUI layout for the options that are used when
applying version tracking markup.
Ghidra/Features/VersionTracking/src/main/java/ghidra/feature/vt/gui/provider/matchtable/ApplyMarkupPropertyEditor.java