private void setEditorIgnoreMarkupValues(Options options) {

		boolean ignoreExcludedMarkup = options.getBoolean(IGNORE_EXCLUDED_MARKUP_ITEMS,
			DEFAULT_OPTION_FOR_IGNORE_EXCLUDED_MARKUP_ITEMS);
		if (ignoreExcludedMarkup != ignoreExcludedCheckBox.isSelected()) {
			ignoreExcludedCheckBox.setSelected(ignoreExcludedMarkup);
		}

		boolean ignoreIncompleteMarkup = options.getBoolean(IGNORE_INCOMPLETE_MARKUP_ITEMS,
			DEFAULT_OPTION_FOR_IGNORE_INCOMPLETE_MARKUP_ITEMS);
		if (ignoreIncompleteMarkup != ignoreIncompleteCheckBox.isSelected()) {
			ignoreIncompleteCheckBox.setSelected(ignoreIncompleteMarkup);
		}
	}
The ApplyMarkupPropertyEditor provides a custom GUI layout for the options that are used when
applying version tracking markup.
Ghidra/Features/VersionTracking/src/main/java/ghidra/feature/vt/gui/provider/matchtable/ApplyMarkupPropertyEditor.java