@Override
	public boolean analysisWorkerCallback(Program program, Object workerContext,
			TaskMonitor monitor) throws Exception, CancelledException {
		// Diff apply done with analysis disabled
		return diffControl.apply(p1AddressSet, monitor);
	}
Command to apply diffs to current program.
Ghidra/Features/ProgramDiff/src/main/java/ghidra/app/plugin/core/diff/ApplyDiffCommand.java