@Override
	public void analysisEnded(AutoAnalysisManager manager, boolean isCancelled) {
		MessageLog log = manager.getMessageLog();
		if (log.hasMessages()) {

			log.write(AutoAnalysisManager.class, "Analysis Log Messages");

			String shortMessage = "There were warnings/errors issued during analysis.";
			String detailedMessage =
				"(These messages are also written to the application log file)\n\n" +
					log.toString();
			MultiLineMessageDialog dialog = new MultiLineMessageDialog("Auto Analysis Summary",
				shortMessage, detailedMessage, MultiLineMessageDialog.WARNING_MESSAGE, false);//modal?
			DockingWindowManager.showDialog(null, dialog);
		}
	}
Show the options panel for the auto analysis options.
Ghidra/Features/Base/src/main/java/ghidra/app/plugin/core/analysis/AutoAnalysisPlugin.java